Cheesy Egg Puffs with Cottage Cheese
Easy to whip up and a tasty addition to any occasion these cheesy egg puffs with cottage cheese are packed with protein and great for meal prep! Made with simple, kitchen staples the egg muffins are then baked until each bite is a blend of savory, cheesy flavors.

A recipe that fits any occasion, these cheesy egg puffs with cottage cheese are loaded with mushrooms, protein, and a salty, savory taste you’ll soon crave. They work perfectly as an addition to brunch, a grab-and-go breakfast, or even an easy, protein-packed snack.
Baked with cottage cheese, they have a rich but almost light texture and they can be made in advance for easy meal prep to save yourself time in the kitchen. Plus, you can mix and match any kind of add-ins to create a new flavor each time you make them.
Once you see how simple these egg puffs are you’ll have the recipe on repeat.
Ingredients
One of the best parts about egg puffs is that they come together with basic kitchen staples. Outside of the flour, all of the ingredients can be found in the fridge which makes the recipe extremely easy to pull together. Just like our FRITTATA recipe, this egg bite recipe is easy and delicious.
See recipe card for full ingredient list and quantities.
Instructions
These Cheesy Egg Puffs with Cottage Cheese are easy to make. Keep in mind that the size of your muffin tin will affect the cooking times needed for the egg and cheese puffs. If you want to make mini egg bite puffs, you won’t need to cook them as long.
Preheat oven to 350°
Melt 1 Tablespoon of butter in a large skillet over medium heat.
Sauté the mushrooms and onions in butter until soft.
Crack and add 10 eggs to a large bowl.
Add in flour, cottage cheese and shredded cheese to eggs. Mix well.
Season egg mixture with salt.
Add melted butter to egg mixture, making sure butter has cooled enough before adding.
Fold in sauteed vegetables to egg and cheese mixture. Mix well.
Fill greased muffin cups 2/3 of the way full. Bake in a preheated oven until cooked through, roughly 35 minutes.
Carefully remove these beautiful cottage cheese egg bites from the muffin cups and allow to cool a few minutes before serving. They will really puff up so you may need to run a knife around the edges to aid in removal.
Why Brooke loves this recipe!
Recipes are like antiques. They are meant to be handed down from one generation to another. Each one holding a special memory or nostalgic memory. Here is why we love this one!
Breakfast doesn’t have to be boring. There are thousands of ways to have healthy protein and vegetables. This recipe combines both to fuel our body and keep us full all morning!
Variations and Substitutions
These cheesy egg muffins are a versatile recipe that can be adapted based on your personal preferences or what you have in the fridge! Below are a few fun variations.
- Vegetables: In place of mushrooms, use chopped bell peppers or broccoli. Try not to use large chunks or tomatoes though as it’ll vary the texture.
- Cheese: Play around with your favorite cheese from using mozzarella to a fiesta blend or even provolone for new flavors.
- More protein: If you want to add more protein or love a savory taste, try adding some chopped bacon or ham to the puffs.
Equipment
🔧 I love to share recipes that are no special equipment required but here are a few things that would definitely make this recipe easier!
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How to Meal Prep and Store These Cheesy Egg Puffs
You can make these cheesy egg puffs with cottage cheese in advance of when you need them which helps save you time on busy mornings.
Once cooked, let them cool fully before storing them in the fridge in an airtight container. Here, they will stay fresh for 5-7 days.
You can also store them in the freezer for up to 3 months. I would separate layers of muffins with layers of parchment paper so that they don’t stick together.
To reheat the cheese egg muffins, bake them in the oven at 400F until warmed through, about 10 minutes.
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Cheesy Egg Puffs with Cottage Cheese
Ingredients
- ½ pound mushrooms sliced
- 4 green onions chopped
- ½ cup butter plus 1 T cubed
- ½ cup self rising flour
- ½ tsp salt
- 10 eggs beaten
- 4 cups cheese shredded
- 2 cups cottage cheese small curd
Instructions
- Preheat oven to 350°. In a skillet over medium heat, saute sliced mushrooms and onions in 1 tablespoons of butter, just until softened.½ pound mushrooms, 4 green onions, ½ cup butter
- In a large bowl, mix together the eggs, shredded cheese and cottage cheese. Melt ½ cup of butter and add to egg mixture. Add in the self rising flour, salt and sauteed vegetables, mixing well.½ cup self rising flour, ½ tsp salt, 10 eggs, 4 cups cheese, 2 cups cottage cheese, ½ cup butter
- Pour into lined or greased muffin cups about ⅔ of the way full. Bake for 30 to 45 minutes until a toothpick inserted comes out clean. They will puff up so you may need a knife to help remove them from muffin tin.
See How To Make It!
Notes
🍴 PRO TIP!
These puffs of deliciousness are prone to puff way up there, almost like a popover. Make sure when cooking in your oven, your oven rack is in the middle to lower position!
🗹 RECIPE FAQ’S
For a puff packed with protein, our recipe includes cottage cheese. You can also use ricotta here or even plain greek yogurt or sour cream. We love a mild white shredded cheese too for that cheesy goodness. Think mozzarella or havarti.
I am not a dietician but I do believe they are. Filled with protein from the eggs and cheeses as well as the addition of fresh mushrooms, you are getting more good than bad. With the adding of the flour, they would not fit into a low carb diet but indeed are a good protein filled breakfast option.
Most times this happens due to them being under cooked. Pop them back into the oven for a few minutes at a time until they set better and are not as soggy. The adding of the vegetables to them does give way to some sogginess but having them sauteed does help cook out some of the moisture from the veggies.
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Looking for other great recipes like this? Try these:
If you make this recipe, be sure and post it to Facebook or Instagram and tag us. We love pictures of food.
Also, if you pin this recipe, we would appreciate that when you make it, you use the Made It function in Pinterest too.
And don’t forget to subscribe to our YOUTUBE channel for some great tutorial videos!
Reader Review
“I loved the freezer tips and made a double batch so we could enjoy some next week. This easy delicious recipe is a keeper.”
– Karen
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